Index

_

_fill_gaps_in_segmentation() (in module napari_easytrack.analysis.optim_backend)

A

add_config_params_to_dict() (in module napari_easytrack.analysis.optim_pipeline)

add_missing_attributes() (in module napari_easytrack.analysis.optim_pipeline)

C

calculate_accuracy() (in module napari_easytrack.analysis.optim_pipeline) cancel_current() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1] clean_segmentation() (in module napari_easytrack.utils)

cleanup() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1] create_btrack_config_dict() (in module napari_easytrack.presets) current_study_name (napari_easytrack.analysis.optim_manager.OptimizationManager attribute) current_thread (napari_easytrack.analysis.optim_manager.OptimizationManager attribute)

D

db_path (napari_easytrack.analysis.optim_manager.OptimizationManager attribute)

db_url (napari_easytrack.analysis.optim_manager.OptimizationManager attribute)

G

get_best_trials() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1] get_presets() (in module napari_easytrack.presets)

get_progress() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1] get_study_summary() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1]

I

is_complete() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1]

is_running (napari_easytrack.analysis.optim_manager.OptimizationManager attribute)

L

load_config_from_json() (in module napari_easytrack.presets) load_files_from_pattern() (in module napari_easytrack.utils)

load_preset_if_exists() (in module napari_easytrack.presets) load_segmentation() (in module napari_easytrack.utils) load_single_stack() (in module napari_easytrack.utils)

M

module napari_easytrack.analysis.optim_backend napari_easytrack.analysis.optim_manager napari_easytrack.analysis.optim_pipeline napari_easytrack.analysis.tracking napari_easytrack.presets napari_easytrack.utils

N

napari_easytrack.analysis.optim_backend module napari_easytrack.analysis.optim_manager module napari_easytrack.analysis.optim_pipeline module

napari_easytrack.analysis.tracking module napari_easytrack.presets module napari_easytrack.utils module

O

OptimizationManager (class in napari_easytrack.analysis.optim_manager)

optimize_dataset() (in module napari_easytrack.analysis.optim_pipeline) optimize_dataset_with_timeout() (in module napari_easytrack.analysis.optim_pipeline)

R

read_config_params() (in module napari_easytrack.analysis.optim_pipeline) remove_small_labels() (in module napari_easytrack.utils) run_cell_tracking_algorithm() (in module napari_easytrack.analysis.optim_pipeline)

run_tracking_core() (in module napari_easytrack.analysis.tracking) run_tracking_process() (in module napari_easytrack.analysis.tracking) run_tracking_with_params() (in module napari_easytrack.analysis.tracking) run_with_timeout() (in module napari_easytrack.analysis.optim_pipeline)

S

should_cancel (napari_easytrack.analysis.optim_manager.OptimizationManager attribute) signals (napari_easytrack.analysis.optim_manager.OptimizationManager attribute) start_optimization() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1]

start_time (napari_easytrack.analysis.optim_manager.OptimizationManager attribute) study (napari_easytrack.analysis.optim_manager.OptimizationManager attribute) study_exists() (napari_easytrack.analysis.optim_manager.OptimizationManager method), [1]

V

validate_params() (in module napari_easytrack.analysis.tracking)

W

write_best_params_to_config() (in module napari_easytrack.analysis.optim_pipeline)