napari-easytrack

Tracking module

  • Tracking optimization and preset — napari_easytrack.analysis.tracking
  • run_tracking_core()
  • run_tracking_process()
  • run_tracking_with_params()
  • validate_params()

Presets module

  • Presets — napari_easytrack.presets
  • create_btrack_config_dict()
  • get_presets()
  • load_config_from_json()
  • load_preset_if_exists()

Utils module

  • Utilities — napari_easytrack.utils
  • clean_segmentation()
  • load_files_from_pattern()
  • load_segmentation()
  • load_single_stack()
  • remove_small_labels()

Optimization Backend module

  • Optimization backend — napari_easytrack.analysis.optim_backend
  • _fill_gaps_in_segmentation()

Optimization Pipeline module

  • Optimization pipeline — napari_easytrack.analysis.optim_pipeline
  • add_config_params_to_dict()
  • add_missing_attributes()
  • calculate_accuracy()
  • optimize_dataset()
  • optimize_dataset_with_timeout()
  • read_config_params()
  • run_cell_tracking_algorithm()
  • run_with_timeout()
  • write_best_params_to_config()

Optimization Manager module

  • Optimization manager — napari_easytrack.analysis.optim_manager
  • OptimizationManager
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